Package: hdbayes 0.1.1.9000
Ethan M. Alt
hdbayes: Bayesian Analysis of Generalized Linear Models with Historical Data
User-friendly functions for leveraging (multiple) historical data set(s) for generalized linear models. The package contains functions for sampling from the posterior distribution of a generalized linear model using the prior induced by the Bayesian hierarchical model, power prior by Ibrahim and Chen (2000) <doi:10.1214/ss/1009212673>, normalized power prior by Duan et al. (2006) <doi:10.1002/env.752>, normalized asymptotic power prior by Ibrahim et al. (2015) <doi:10.1002/sim.6728>, commensurate prior by Hobbs et al. (2011) <doi:10.1111/j.1541-0420.2011.01564.x>, robust meta-analytic-predictive prior by Schmidli et al. (2014) <doi:10.1111/biom.12242>, the latent exchangeability prior by Alt et al. (2023) <doi:10.48550/arXiv.2303.05223>, and a normal (or half-normal) prior. Functions for computing the marginal log-likelihood under each of the implemented priors are also included. The package compiles all the 'CmdStan' models once during installation using the 'instantiate' package.
Authors:
hdbayes_0.1.1.9000.tar.gz
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hdbayes.pdf |hdbayes.html✨
hdbayes/json (API)
NEWS
# Install 'hdbayes' in R: |
install.packages('hdbayes', repos = c('https://ethan-alt.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/ethan-alt/hdbayes/issues
- E1684 - ECOG E1684 Trial
- E1690 - ECOG E1690 Trial
- E1694 - ECOG E1694 Trial
- E2696 - ECOG E2696 Trial
- IBCSG_curr - International Breast Cancer Study Group (IBCSG) Trial VI Data
- IBCSG_hist - International Breast Cancer Study Group (IBCSG) Trial VI Data
- actg019 - AIDS Clinical Trial ACTG019
- actg036 - AIDS Clinical Trial ACTG036
Last updated 2 months agofrom:5b4c1bed13. Checks:OK: 9. Indexed: yes.
Target | Result | Date |
---|---|---|
Doc / Vignettes | OK | Oct 09 2024 |
R-4.5-win-x86_64 | OK | Oct 09 2024 |
R-4.5-linux-x86_64 | OK | Oct 09 2024 |
R-4.4-win-x86_64 | OK | Oct 09 2024 |
R-4.4-mac-x86_64 | OK | Oct 09 2024 |
R-4.4-mac-aarch64 | OK | Oct 09 2024 |
R-4.3-win-x86_64 | OK | Oct 09 2024 |
R-4.3-mac-x86_64 | OK | Oct 09 2024 |
R-4.3-mac-aarch64 | OK | Oct 09 2024 |
Exports:glm.bhmglm.commensurateglm.leapglm.logml.commensurateglm.logml.leapglm.logml.mapglm.logml.nappglm.logml.nppglm.logml.postglm.logml.ppglm.nappglm.nppglm.npp.logncglm.postglm.ppglm.rmaplm.npp
Dependencies:abindbackportsbridgesamplingBrobdingnagcallrcheckmateclicodacolorspacedistributionalenrichwithfansifarverformula.toolsfsgenericsglueinstantiatelabelinglatticelifecyclemagrittrMatrixmatrixStatsmclustmunsellmvtnormnumDerivoperator.toolspillarpkgconfigposteriorprocessxpsR6RColorBrewerrlangscalesstringistringrtensorAtibbleutf8vctrsviridisLite